EMC pinout

Hi,
I am a Mechanical Engineering student at UNC
Charlotte and my senior design project is to retrofit
a Bridgport mill with slo-syn controller to EMC
control. Right now I am at a stage where I am trying
to control a Step-syn stepper with a Qualidyne
driver/power supply.
The driver has a parport connection, but the pin
configuration is different than the EMC standard
paport pinout. Is there somewhere in the EMC
configuration files where I can make a quick change to
the pinout configuration?

Thanks.